I would have to say NO. You should not be able to hear anything I would call a "whistle" over the sound of the exhaust.
I diesel the size of the ISL (8.9L displacement) sucks a huge amount of air continuously, whether the turbo is boosting or not. Any small leak between the engine and the air filter is probably going to whistle as air gets sucked thru a small hole. A dirty air filter make it worse, increasing the suction.
Are you sure it is air intake whistle? What abut the air compressor (driven off the front of the engine) or some other part of the air system. That runs as soon as the engine starts and could have its own whistle leak.