Is your water heater still open? You have to fill the water heater tank before water will appear at any of the hot water outlets. With the system pressurized, open a hot water faucet and see if you hear air escaping. Put your hand over the outlet if you aren't sure. Leave it open until the tank is full and water starts to flow.
An empty hot water tank will also steal water flow and pressure from the rest of the system until it fills.
Also make sure water isn't backflowing through the water pump and into the fresh water tank. The pump should act as a one way valve to keep this from happening, if it's bad it may be letting water into the tank and stealing pressure from the rest of the system.
There may be winterizing bypass valves on the inside of the water heater - make sure they aren't bypassing the tank.
Other than that, the water system is pretty simple, with a master line running from one fixture to the next and feed lines teed off from it. There usually aren't any individual shutoff valves. You should be able to trace most of the system by looking in cabinets, etc.
Sometimes the aerator screens in the faucets plug up. The tips of most faucets unscrew so you can remove and clean them. Do the same for the showerhead - usually there's a water shutoff valve at the head so you can take a Navy shower - wet down, turn of the water while you soap up, then rinse.
For the toilet, unscrew the water coupling, have someone turn on the outside water momentarily and see if you get a flow. You might have lost the toilet valve in a freeze.